Workflow

This section contains example notebooks demonstrating common PtyRAD workflow.

Getting Started

Running PtyRAD — Quickstart to run your first PtyRAD reconstruction.

Read PtyRAD Output hdf5 — How to load, read, and parse PtyRAD HDF5 outputs.

Analysis

Get Affine from Image — Calculate affine matrices to correct scan distortions.

Get error distribution — Diagnostics for error distributions.

Get local object tilts — Extract local object tilts.

Reproducibility

Get reconstruction provenance — Recover full reconstruction history from sequential runs.