ptyrad.plotting.basic

Plotting functions for basic outputs including probe modes, loss curves, positions, etc.

Functions

plot_affine_transformation(scale, asymmetry, ...)
plot_loss_curves(loss_iters[, last_n_iters, ...])
plot_obj_tilts(pos, tilts[, figsize, ...])	Plot the obj tilts given the probe position and pos-dependent tilts
plot_obj_tilts_avg(avg_tilt_iters[, ...])
plot_pos_grouping(pos, batches[, ...])
plot_probe_modes([init_probe, opt_probe, ...])
plot_scan_positions(pos[, init_pos, img, ...])	Plot the scan positions given an array of (N,2)
plot_sigmoid_mask(Npix, relative_radius, ...)	Plot a sigmoid mask overlay on img with a line profile
plot_slice_thickness(dz_iters[, ...])

ptyrad.plotting.basic.plot_sigmoid_mask(Npix, relative_radius, relative_width, img=None, show_circles=False)

Plot a sigmoid mask overlay on img with a line profile

ptyrad.plotting.basic.plot_obj_tilts_avg(avg_tilt_iters, last_n_iters=2, show_fig=True, pass_fig=False)

ptyrad.plotting.basic.plot_obj_tilts(pos, tilts, figsize=(16, 16), show_fig=True, pass_fig=False)

Plot the obj tilts given the probe position and pos-dependent tilts

ptyrad.plotting.basic.plot_scan_positions(pos, init_pos=None, img=None, offset=None, figsize=(16, 16), dot_scale=0.001, show_arrow=True, show_fig=True, pass_fig=False)

Plot the scan positions given an array of (N,2)

ptyrad.plotting.basic.plot_affine_transformation(scale, asymmetry, rotation, shear)

ptyrad.plotting.basic.plot_pos_grouping(pos, batches, circle_diameter=False, diameter_type='90%', figsize=(16, 8), dot_scale=1, show_fig=True, pass_fig=False)

ptyrad.plotting.basic.plot_loss_curves(loss_iters, last_n_iters=10, show_fig=True, pass_fig=False)

ptyrad.plotting.basic.plot_slice_thickness(dz_iters, last_n_iters=10, show_fig=True, pass_fig=False)

ptyrad.plotting.basic.plot_probe_modes(init_probe=None, opt_probe=None, amp_or_phase='amplitude', real_or_fourier='real', phase_cmap=None, amplitude_cmap=None, show_fig=True, pass_fig=False)